CLRNASeq™ is a standalone application developed for the secondary analysis of microbial transcript expression analysis results. It uses clt data files generated by ChunLab's proprietary RNA-Seq pipeline. The built-in genome browser can be used to view expression levels, expression patterns, and many more statistics. The simple and intuitive interface aids researchers without bioinformatics expertise to perform secondary analyses with ease, and create publication-caliber visuals.
Visualize mRNA-microbial genome mapping
Inter-sample comparison of differentially expressed genes (DEG)
Rapid searches for gene groups with similar expression patterns by hierarchical clustering, SOM clustering, and K-Means algorithm
Support for pathway & enrichment analysis: KEGG, eggNOG, Gene Ontology
Statistics: RPKM table, total reads, mRNA reads, rRNA reads, unmapped reads, and more